| Bam directory: | /crex/proj/snic2019-30-56/lilit/fivepseq_releases/fivepseq_1.0b5/yeast_eIF5A/bam/*.bam |
| Bam files: | 1_eIF5A_mut_R1 2_WT_R3 3_eIF5A_mut_R1 |
| Genome file: | /crex/proj/snic2019-30-56/lilit/fivepseq_releases/fivepseq_1.0b5/yeast_eIF5A/genome/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa |
| Annotation file: | /crex/proj/snic2019-30-56/lilit/fivepseq_releases/fivepseq_1.0b5/yeast_eIF5A/gff/Saccharomyces_cerevisiae.R64-1-1.94.gff3 |
| Gene set file: | /crex/proj/snic2019-30-56/lilit/fivepseq_releases/fivepseq_1.0b5/yeast_eIF5A/genesets/genelist_location_top5.txt |
| Gene filter file: | None |
| Output directory: | /crex/proj/snic2019-30-56/lilit/fivepseq_releases/fivepseq_1.0b5/yeast_eIF5A/fivepseq/fivepseq_plots |
| Conflict mode: | add |
| Span size: | 100 |
| Transcript type: | protein_coding |
| Outlier detection p value [--op]: | 0 |
| Down-sampling constant [--ds] | None |
| Masking transcript boundaries for codon counts [--no-mask --mask_codon_size]: | by 20 positions |
| Dipeptide relative counts sorted at A-site relative position [--dipeptide_pos]: | -14 |
| Tripeptide relative counts sorted at A-site relative position [--tripeptide_pos]: | -11 |
| Sample | Library size (M) |
|---|---|
| 1_eIF5A_mut_R1 | 0.55290 |
| 2_WT_R3 | 0.31480 |
| 3_eIF5A_mut_R1 | 0.44620 |
| Main report | main/yeast_eIF5A_main.html |
| Combined samples | main/yeast_eIF5A_combined.html |
| Amino acid line-charts | supplement/yeast_eIF5A_amino_acid_linecharts.html |
| Codon line-charts: | supplement/yeast_eIF5A_codon_linecharts.html |
| Codon heatmaps: | supplement/yeast_eIF5A_codon_heatmaps.html |
| Dipeptide linecharts: | supplement/yeast_eIF5A_dipeptide_linecharts.html |
| Tripeptide linecharts: | supplement/yeast_eIF5A_tripeptide_linecharts.html |
| Dicodon linecharts: | supplement/yeast_eIF5A_dicodon_linecharts.html |
| Tricodon linecharts: | supplement/yeast_eIF5A_tricodon_linecharts.html |
| Differential heatmaps: | comparison/yeast_eIF5A_differential_heatmaps.html |
| Compare samples in each gene-set | genesets/yeast_eIF5A_samples_per_geneset.html |
| Compare gene-sets in each sample | genesets/yeast_eIF5A_genesets_per_sample.html |