| Bam directory: | /crex/proj/snic2019-30-56/lilit/fivepseq_1.0b0_datasets/human_riboprof/star_align/*.bam |
| Bam files: | SRR3306589_1.fastqAligned.sortedByCoord.out |
| Genome file: | /proj/snic2019-30-56/lilit/genome/human/ensembl/fa/Homo_sapiens.GRCh38.dna_rm.primary_assembly.fa |
| Annotation file: | /proj/snic2019-30-56/lilit/genome/human/ensembl/gff/Homo_sapiens.GRCh38.93.gff3 |
| Gene set file: | None |
| Gene filter file: | None |
| Output directory: | /crex/proj/snic2019-30-56/lilit/fivepseq_1.0b0_datasets/human_riboprof/fivepseq/fivepseq_plots |
| Conflict mode: | add |
| Span size: | 100 |
| Outlier detection p value [--op]: | 0 |
| Down-sampling constant [--ds] | None |
| Sample | Library size (M) |
|---|---|
| SRR3306589_1.fastqAligned.sortedByCoord.out | 130.41029 |
| Main report | main/human_riboprof_main.html |
| Combined samples | None |
| Amino acid line-charts | supplement/human_riboprof_amino_acid_linecharts.html |
| Codon line-charts: | supplement/human_riboprof_codon_linecharts.html |
| Codon heatmaps: | supplement/human_riboprof_codon_heatmaps.html |
| Compare samples in each gene-set | None |
| Compare gene-sets in each sample | None |