| Bam directory: | /crex/proj/sllstore2017018/lilit/fivepseq_release_1.0/data4/pare_inhouse/star_align/*primary*.bam |
| Bam files: | SRR3143655_1.fastqAligned.primary.out SRR3143654_1.fastqAligned.primary.out |
| Genome file: | /crex/proj/sllstore2017018/lilit/fivepseq_release_1.0/data4/pare_inhouse/genome/Arabidopsis_thaliana.TAIR10.dna.toplevel.fa |
| Annotation file: | /crex/proj/sllstore2017018/lilit/fivepseq_release_1.0/data4/pare_inhouse/gff/Arabidopsis_thaliana.TAIR10.45.gff3 |
| Gene set file: | None |
| Gene filter file: | None |
| Output directory: | /crex/proj/sllstore2017018/lilit/fivepseq_release_1.0/data4/pare_inhouse/fivepseq/fivepseq_plots |
| Conflict mode: | add |
| Span size: | 100 |
| Outlier detection p value [--op]: | 0 |
| Down-sampling constant [--ds] | None |
| Sample | Library size (M) |
|---|---|
| SRR3143655_1.fastqAligned.primary.out | 75.62843 |
| SRR3143654_1.fastqAligned.primary.out | 82.68170 |
| Main report | main/arb_pare_main.html |
| Combined samples | main/arb_pare_combined.html |
| Amino acid scatter-plots | supplement/arb_pare_amino_acid_scatterplots.html |
| Codon scatter-plots: | supplement/arb_pare_codon_scatterplots.html |
| Codon heatmaps: | supplement/arb_pare_codon_heatmaps.html |
| Compare samples in each gene-set | None |
| Compare gene-sets in each sample | None |